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1. Human Whole genome sequencing
Whole Genome Sequencing (WGS) is applied to identify the somatic and germline mutations, structural variations, copy number variations (CNV) and SNP loci via the re-sequencing of the human genome, to further explore the pathogenesis, pharmacological mechanism and susceptible gene targets of disease and cancer genomes from the perspective of comprehensive application of comparative genomics, population genetics and pharmacogenomics.
Sample requirement:
Platform Type |
Sample Type |
Amount (Qubit) |
Purity |
Illumina Novaseq 6000 |
Genomic DNA |
≥500 ng |
OD260/280=1.8-2.0 |
Genomic DNA (PCR free) |
≥1.5 ug |
||
Genomic DNA from FFPE |
≥0.8 ug |
||
PacBio Sequel I/II |
HMW Genomic DNA |
≥10 ug (for Sequel I) |
OD260/280=1.8-2.0; ≥ 60 Kb for Sequel II |
Nanopore PromethION |
HMW Genomic DNA |
≥10 ug |
OD260/280=1.8-2.0; |
2. Animal and Plant whole genome sequencing
Whole genome sequencing (WGS) provides the most comprehensive collection of the genetic variations in individuals of the same species or between related species. The variation information such as Single Nucleotide Polymorphism (SNP), Insertion and Deletion (InDel), Copy Number Variation (CNV), and structural variation (SV) obtained through WGS is used in population genetics research and genome-wide association studies (GWAS) to investigate the causes of diseases, to select plants and animals for agricultural breeding programs, and to identify common genetic variations among populations.
Sample requirement:
Platform Type |
Sample Type |
Amount (Qubit) |
Purity |
Illumina Novaseq 6000 |
Genomic DNA |
≥500 ng |
OD260/280=1.8-2.0 |
Genomic DNA (PCR free) |
≥1.5 ug |
||
Genomic DNA from FFPE |
≥0.8 ug |
||
PacBio Sequel I/II |
HMW Genomic DNA |
≥10 ug (for Sequel I) |
OD260/280=1.8-2.0; ≥ 60 Kb for Sequel II |
Nanopore PromethION |
HMW Genomic DNA |
≥10 ug |
OD260/280=1.8-2.0; |
3. Microbial whole genome sequencing
Bacterial and fungal whole genome re-sequencing is a critical tool to complete the genomes of known bacterium and fungi, as well as to compare multiple genomes or to map genomes of new organisms. It is of great importance to sequence entire genomes of bacterium and fungi in order to generate accurate reference genomes, to do microbial identification and other comparative genome studies.
Compared with traditional methods like PCR, next generation sequencing (NGS) excels in the way of multiplexing vast number of samples, providing identifications of SNP/InDel/CNV/SV with great reliability, turnaround time and cost performance.
Sample requirement:
Sample Type |
Amount (Qubit) |
Purity |
Genomic DNA |
≥ 500 ng |
OD260/280=1.8-2.0 |